org.algernon.test
Class BasicTest

java.lang.Object
  org.algernon.test.BasicTest

public class BasicTest

extends Object

Tests basic execution functionality of Algernon. Does not test the compiler. Example:

 java  -classpath $HOME/projects:$ALGY/src:$PHARMGEN/lib/protege.jar org.algernon.test.BasicTest
 

See Also:

Algernon

Field Summary

protected Algernon	f_algy
protected AlgernonKB	f_kb
protected Jatha	f_lisp
protected String	m_assert1
protected String	m_create1
protected String	m_create2
protected String	m_create3
protected String	m_create4
protected String	m_create5a
protected String	m_create5b
protected String	m_create6a
protected String	m_create6b
protected String	m_create7a
protected String	m_create7b
protected String	m_create7c
protected String	m_create7d
protected String	m_create7e
protected String	m_defaultProject
protected AlgernonKBSet	m_kbset
protected String	m_PharmGKB_Beta
protected String	m_PharmGKB_Prod
protected String	m_query1
protected String	m_query2
protected String	m_query3
protected String	m_query4
protected String	m_query5
protected String	m_query6
protected String	m_rule1
protected String	m_rule2
protected String	m_rule3

Constructor Summary

BasicTest()

Method Summary

void	displayByGene(List genes)
void	displayByStudyCenter(List studyCenters)
void	displayResults(List studyCenters, List genes)
void	init() Reads in the parameters and tries to open the KB.
static void	main(String[] args)
void	miscTests()
void	PharmGKBTest() This performs the same function as the misc.MHQuery1 program.
void	start() Executes some small code snippets.
void	stop() Halts the program nicely.
void	testAsk() Tests the Algernon "ask" command.
void	testCompile()
void	testCompile2()
void	testCompile3()
void	testCreate()
void	testLookup()
void	testNoCompile()
void	testRuleCompile1()
void	testRuleCompile2()
void	testTell() Tests the Algernon "tell" command.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

f_kb

protected AlgernonKB f_kb

m_kbset

protected AlgernonKBSet m_kbset

f_algy

protected Algernon f_algy

f_lisp

protected Jatha f_lisp

m_defaultProject

protected String m_defaultProject

m_PharmGKB_Beta

protected String m_PharmGKB_Beta

m_PharmGKB_Prod

protected String m_PharmGKB_Prod

m_query1

protected String m_query1

m_query2

protected String m_query2

m_query3

protected String m_query3

m_query4

protected String m_query4

m_query5

protected String m_query5

m_query6

protected String m_query6

m_create1

protected String m_create1

m_create2

protected String m_create2

m_create3

protected String m_create3

m_create4

protected String m_create4

m_create5a

protected String m_create5a

m_create5b

protected String m_create5b

m_create6a

protected String m_create6a

m_create6b

protected String m_create6b

m_create7a

protected String m_create7a

m_create7b

protected String m_create7b

m_create7c

protected String m_create7c

m_create7d

protected String m_create7d

m_create7e

protected String m_create7e

m_assert1

protected String m_assert1

m_rule1

protected String m_rule1

m_rule2

protected String m_rule2

m_rule3

protected String m_rule3

Constructor Detail

BasicTest

public BasicTest()

Method Detail

main

public static void main(String[] args)

init

public void init()

Reads in the parameters and tries to open the KB.

stop

public void stop()

Halts the program nicely.

start

public void start()

Executes some small code snippets.

miscTests

public void miscTests()

testNoCompile

public void testNoCompile()

testCompile

public void testCompile()

testCompile2

public void testCompile2()

testCompile3

public void testCompile3()

testCreate

public void testCreate()

testLookup

public void testLookup()

testTell

public void testTell()

Tests the Algernon "tell" command.

testAsk

public void testAsk()

Tests the Algernon "ask" command.

PharmGKBTest

public void PharmGKBTest()
                  throws AlgernonException

This performs the same function as the misc.MHQuery1 program. It produces a report of database contents.

Throws:

AlgernonException

displayResults

public void displayResults(List studyCenters,
                           List genes)

displayByStudyCenter

public void displayByStudyCenter(List studyCenters)

displayByGene

public void displayByGene(List genes)

testRuleCompile1

public void testRuleCompile1()

testRuleCompile2

public void testRuleCompile2()